Differential hybridization of amplified HpaII frangments between prostate cancer cell lines "(PC3, PC3M, PC3M-Pro4, PC3M-LN4, and LNCaP) and immortalized prostate epithelial lines (RWPE-1, 267B1 and MIcsv40)" "M = increased methylation, decreased copy number, or loss of a restriction site in the cancer line." "U = increased methylation, decreased copy number, or loss of a restriction site in the immortalized line." * = differential hybridization may be due to copy number changes contains PC3 PC3M PC3M-Pro4 PC3M-LN4 LNCaP Refseq ID Gene Symbol CpG island chr RWPE-1 267B1 Mlcsv40 RWPE-1 267B1 Mlcsv40 RWPE-1 267B1 Mlcsv40 RWPE-1 267B1 Mlcsv40 RWPE-1 267B1 Mlcsv40 Gene Description NM_024915 FLJ13782 1 8 U* M M M M* M* M* U hypothetical protein FLJ13782 NM_015855 WIT-1 1 11 M M M M M M M M M U Wilms tumor associated protein NM_014350 GG2-1 1 5 M M M M M* M TNF-induced protein NM_000905 NPY 1 7 U* M* M M M M M M neuropeptide Y NM_006142 SFN 1 1 U U M U M U M M stratifin NM_000208 INSR 1 19 M M M M M insulin receptor NM_021025 TLX3 1 5 M M M* M M M M M M M M "T-cell leukemia, homeobox 3" NM_003206 TCF21 1 6 M M M M M M M M M U transcription factor 21 NM_138551 TSLP 1 5 M M M M M M M M M M M M M thymic stromal lymphopoietin NM_024501 HOXD1 1 2 M M M M M M M M M M M M M homeo box D1 NM_003118 SPARC 0 5 M M M M M M M M M M M "secreted protein, acidic, cysteine-rich (osteonectin)" NM_052860 ZNF300 1 5 M zinc finger protein 300 NM_001482 GATM 1 15 M M M M M M glycine amidinotransferase (L-arginine:glycine amidinotransferase) NM_017902 HIF1AN 0 10 M* M* M* M M "hypoxia-inducible factor 1, alpha subunit inhibitor" NM_017790 RGS3 0 9 M M M M regulator of G-protein signalling 3 isoform 3 NM_001538 HSF4 1 16 M M M M M M M heat shock transcription factor 4 NM_005593 MYF5 1 12 M M M M M M M myogenic factor 5 NM_007105 SLC22A1LS 0 11 M M "solute carrier family 22 (organic cation transporter), member 1-like antisense" NM_024331 C20orf121 1 20 M M* M M M chromosome 20 open reading frame 121 NM_003529 HIST1H3A 1 6 M M M M M M* M* M* "H3 histone family, member A" NM_004419 DUSP5 1 10 M M M dual specificity phosphatase 5 NM_005599 NHLH2 1 1 M M nescient helix loop helix 2 NM_018294 FLJ10998 1 10 M M M* M hypothetical protein FLJ10998 NM_020796 SEMA6A 1 5 M M M M M M M M* semaphorin 6A1 NM_025002 FLJ13162 1 6 M M M M hypothetical protein FLJ13162 NM_145285 NKX2-3 1 10 M* M "NK2 transcription factor related, locus 3 (Drosophila)" NM_020168 PAK6 1 15 M M M* p21-activated protein kinase 6 NM_022755 C9orf12 1 9 M M* M* chromosome 9 open reading frame 12 NM_017824 FLJ20445 1 10 M M* hypothetical protein FLJ20445 NM_183401 RNF14 1 5 M* ring finger protein 14 NM_017614 BHMT2 1 5 M* M* betaine-homocysteine methyltransferase 2 NM_001790 CDC25C 1 5 M* "cell division cycle 25C protein, isoform a" NM_052841 STK22C 1 1 M serine/threonine kinase 22C (spermiogenesis associated) NM_031437 RASSF5 1 1 U Ras association (RalGDS/AF-6) domain family 5 NM_003222 TFAP2C 1 20 M* M* transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) NM_004878 PTGES 0 9 M M M prostaglandin E synthase NM_000043 TNFRSF6 1 10 M M M* M "tumor necrosis factor receptor superfamily, member 6 isoform 1 precursor" NM_032783 FLJ14431 1 4 M* hypothetical protein FLJ14431 NM_003177 SYK 1 9 M* spleen tyrosine kinase NM_014003 DHX38 1 16 M M pre-mRNA splicing factor Prp16 NM_003791 MBTPS1 1 16 M M site-1 protease preproprotein NM_004125 GNG10 1 9 M "guanine nucleotide binding protein (G protein), gamma 10" NM_020121 UGCGL2 1 13 M M* UDP-glucose:glycoprotein glucosyltransferase 2 NM_030971 BA108L7.2 1 10 M* M* M similar to rat tricarboxylate carrier-like protein NM_000138 FBN1 1 15 M M M* M* M M M fibrillin 1 NM_018197 ZFP64 1 20 M M* M* M M* M* M* zinc finger protein 64 NM_002052 GATA4 1 8 M M M M M M M GATA binding protein 4 NM_025264 C2orf8 1 2 M M hypothetical protein MGC2454 NM_080652 MGC15397 1 3 M M M similar to RIKEN cDNA 5730578N08 gene NM_005165 ALDOC 0 17 U "aldolase C, fructose-bisphosphate" NM_144503 F11R 1 1 M M M M M M junctional adhesion molecule 1 isoform a precursor NM_006898 HOXD3 1 2 M M M M M M M M M homeo box D3 NM_016733 LIMK2 0 22 M M M M M LIM domain kinase 2 isoform 2b NM_006871 RIPK3 1 14 M M receptor-interacting serine-threonine kinase 3 NM_014080 DUOX2 1 15 M M M M M M M M dual oxidase 2 NM_052918 SORCS1 1 10 M* M* M M M M sortilin-related VPS10 domain containing receptor 1 NM_002110 HCK 1 20 M* M* M* M* M* M* M M* M* M* M* hemopoietic cell kinase NM_000441 SLC26A4 1 7 M M M M M M M M M pendrin NM_004817 TJP2 1 9 M M M* M M M* M M tight junction protein 2 (zona occludens 2) NM_021828 HPSE2 0 10 M M* M M M* heparanase 2 NM_003780 B4GALT2 0 1 M M M "UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 2 isoform b" NM_001374 DNASE1L2 1 16 M M M M M deoxyribonuclease I-like 2 NM_021154 PSAT1 1 9 M M phosphoserine aminotransferase isoform 2 NM_002202 ISL1 1 5 M M M* M M islet-1 NM_002084 GPX3 1 5 M M* M M M* plasma glutathione peroxidase 3 precursor NM_004523 KIF11 1 10 M M M M M M* kinesin family member 11 NM_012449 STEAP 1 7 M M M M M M M six transmembrane epithelial antigen of the prostate NM_033028 BBS4 1 15 M M* M M M M M M Bardet-Biedl syndrome 4 NM_004647 DPF1 1 19 M M Neuro-d4 (rat) homolog NM_000125 ESR1 1 6 M estrogen receptor 1 NM_005732 RAD50 1 5 M M* M M M M M M RAD50 homolog isoform 1 NM_021967 SERF1A 1 5 M* M* small EDRK-rich factor 1A (telomeric) NM_022145 FKSG14 1 5 M* M* M* M* M* M* leucine zipper protein FKSG14 NM_133338 RAD17 1 5 M* M* M* M* RAD17 homolog isoform 1 NM_133342 RAD17 1 5 M* M* M* M* RAD17 homolog isoform 1 NM_153713 MGC46719 1 1 M M M M hypothetical protein MGC46719 NM_003308 TSPY 1 Y M* M* M* M* M* M* M* M* U* "testis specific protein, Y-linked" NM_022573 TSPYQ1 0 Y M* M* M* M* M* M* M* M* U* "testis specific protein, Y-linked 2" NM_002467 MYC 1 8 U* U* U U U U U U* U* U* U* v-myc myelocytomatosis viral oncogene homolog NM_018071 FLJ10357 0 14 U U U U U hypothetical protein FLJ10357 NM_002578 PAK3 0 X U U U U* U* U* U U* U* p21-activated kinase 3 NM_004535 MYT1 0 20 U U U U myelin transcription factor 1 NM_015460 MYRIP 1 3 U* U U U U* U U* U M myosin VIIA and Rab interacting protein NM_005362 MAGEA3 1 X U U U U U U "melanoma antigen, family A, 3" NM_032804 FLJ14547 1 10 U U* U* U U U U* U* U U* U* hypothetical protein FLJ14547 NM_003762 VAMP4 1 1 U U U U U U U U U U U vesicle-associated membrane protein 4 NM_030759 NRBF-2 1 10 U U* U* nuclear receptor binding factor-2 NM_014951 ZNF365 1 10 U U* U* U U U* U* U U* U* KIAA0844 protein NM_002658 PLAU 1 10 U U U* U U U U U* U* U U U* "plasminogen activator, urokinase" NM_007055 RPC155 1 10 U U U U U U U U U M* M* M* "polymerase (RNA) III (DNA directed) polypeptide A, 155kDa" NM_005822 DSCR1L1 0 6 M M* Down syndrome critical region gene 1-like 1 protein NM_018649 H2AFY2 1 10 U* U U U* M core histone macroH2A2.2 NM_003242 TGFBR2 1 3 U* M M M "transforming growth factor, beta receptor II (70/80kDa)" NM_021614 KCNN2 1 5 U U U small conductance calcium-activated potassium channel protein 2 isoform a NM_003591 CUL2 1 10 U U U cullin 2 NM_017444 CHRAC1 1 8 U* U* U* chromatin accessibility complex 1 NM_018444 PPM2C 1 8 U* U* U* pyruvate dehydrogenase phosphatase NM_001642 APLP2 1 11 U* U* U* amyloid beta (A4) precursor-like protein 2 NM_016077 CGI-147 1 17 U CGI-147 protein NM_022831 FLJ12806 1 1 U U U hypothetical protein FLJ12806 NM_018186 FLJ10706 1 1 U U U hypothetical protein FLJ10706 NM_016026 RDH11 0 14 U* U* U* androgen-regulated short-chain dehydrogenase/reductase 1 NM_006019 TCIRG1 1 11 U U U "T-cell, immune regulator 1, isoform a" NM_006888 CALM1 1 14 U U "calmodulin 1 (phosphorylase kinase, delta)" NM_003744 NUMB 1 14 U U* U* numb homolog NM_006255 PRKCH 1 14 U* U* U* "protein kinase C, eta" NM_004702 CCNE2 1 8 U* U* cyclin E2 isoform 3 NM_021052 HIST1H2AE 1 6 M* "H2A histone family, member A" NM_138635 H2AV 1 7 U histone H2A.F/Z variant isoform 2 NM_004282 BAG2 1 6 M* M* BCL2-associated athanogene 2 NM_021064 HIST1H2AG 1 6 M* "H2A histone family, member P" NM_019014 POLR1B 1 2 M M similar to DNA-directed RNA polymerase I (135 kDa) NM_013324 CISH 1 3 U U cytokine-inducible SH2-containing protein isoform 1 NM_144695 FLJ32421 1 1 U hypothetical protein FLJ32421 NM_016023 CGI-77 1 8 U* U* CGI-77 protein NM_007057 ZWINT 1 10 U* U* ZW10 interactor NM_002290 LAMA4 1 6 U U U "laminin, alpha 4 precursor" NM_016249 MAGEE1 0 X U U U* "melanoma antigen, family E, 1, cancer/testis specific" NM_001607 ACAA1 1 3 U* acetyl-Coenzyme A acyltransferase 1 NM_022461 AZ2 1 3 U* hypothetical protein FLJ21939 similar to 5-azacytidine induced gene 2 NM_025010 KIAA0795 1 3 U* hypothetical protein FLJ13703 NM_003666 BLZF1 0 1 U basic leucine zipper nuclear factor 1 (JEM-1) NM_013374 PDCD6IP 1 3 U* programmed cell death 6 interacting protein NM_006840 LILRB5 0 19 U U U U U "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5" NM_003373 VCL 1 10 U U U U vinculin isoform VCL NM_000486 AQP2 0 12 U U U* aquaporin 2 NM_004693 K6HF 0 12 U U U* U U U cytokeratin type II NM_020634 GDF3 0 12 U U U growth differentiation factor 3 precursor NM_002644 PIGR 0 1 U U U polymeric immunoglobulin receptor NM_000497 CYP11B1 0 8 U* U* U U "cytochrome P450, family 11, subfamily B, polypeptide 1" NM_002814 PSMD10 1 X U U* proteasome 26S non-ATPase subunit 10 isoform 1 NM_001674 ATF3 1 1 U U U activating transcription factor 3 long isoform NM_021029 RPL36A 1 X U U U ribosomal protein L36a NM_018972 GDAP1 1 8 U* ganglioside-induced differentiation-associated protein 1 NM_000858 GUK1 1 1 U U U U guanylate kinase 1 NM_004024 ATF3 1 1 U U U activating transcription factor 3 delta Zip isoform NM_018099 FLJ10462 0 12 U U hypothetical protein FLJ10462 NM_000124 ERCC6 1 10 U "excision repair cross-complementing rodent repair deficiency, complementation group 6" NM_001123 ADK 1 10 U U U adenosine kinase isoform a NM_007265 HSGT1 1 10 U U U* U* U U* suppressor of S. cerevisiae gcr2 NM_005329 HAS3 1 16 U U hyaluronan synthase 3 NM_023032 METTL1 1 12 U U methyltransferase-like protein 1 isoform b NM_023033 METTL1 1 12 U U U methyltransferase-like protein 1 isoform c NM_021222 HTCD37 1 1 M M TcD37 homolog NM_001452 FOXF2 1 6 U U U forkhead box F2 NM_000641 IL11 0 19 M M U U interleukin 11 precursor NM_014213 HOXD9 1 2 U homeo box D9 NM_005557 KRT16 0 17 U U keratin 16 NM_004314 ART1 0 11 U ADP-ribosyltransferase 1 NM_004681 EIF1AY 1 Y M M* "eukaryotic translation initiation factor 1A, Y chromosome" NM_016124 RHD 0 1 U U U U Rh blood group D antigen isoform 1 NM_021193 HOXD12 1 2 U homeo box D12 NM_020314 MGC16824 1 16 U esophageal cancer associated protein NM_003307 TRPM2 0 21 U "transient receptor potential cation channel, subfamily M, member 2" NM_005432 XRCC3 1 14 U X-ray repair cross complementing protein 3 NM_015250 BICD2 1 9 U* coiled-coil protein BICD2 NM_006783 GJB6 0 13 U* "gap junction protein, beta 6 (connexin 30)" NM_139209 GPRK7 1 3 U U U G protein-coupled receptor kinase 7 NM_004264 SURB7 1 12 U SRB7 suppressor of RNA polymerase B homolog NM_000224 KRT18 1 12 U U U keratin 18 NM_006106 YAP1 1 11 U U "Yes-associated protein 1, 65 kD" NM_152879 DGKD 0 2 U "diacylglycerol kinase, delta 130kDa isoform 2" NM_145254 LOC124491 1 16 U LOC124491 NM_153259 MCOLN2 1 1 U mucolipin 2 NM_005940 MMP11 1 22 U matrix metalloproteinase 11 preproprotein NM_014409 TAF5L 1 1 U PCAF associated factor 65 beta NM_080605 B3GALT6 0 1 U U "UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6" NM_024012 HTR5A 1 7 U U 5-hydroxytryptamine (serotonin) receptor 5A NM_021106 RGS3 0 9 U U regulator of G-protein signalling 3 isoform 2 NM_001327 CTAG1 0 X U U U U U U U U U cancer/testis antigen 1 NM_020177 FEM1C 0 5 U U U U* feminization 1 homolog a NM_025228 DJ434O14.3 0 1 U U U U U U hypothetical protein dJ434O14.3 NM_004679 VCY 0 Y U* U U U* U U* U* U U "variable charge, Y chromosome" NM_017745 BCOR 1 X U U U BCL-6 interacting corepressor isoform 1 NM_014345 ZNF318 1 6 U U U endocrine regulator NM_005597 NFIC 1 19 U U U nuclear factor I/C (CCAAT-binding transcription factor) NM_006206 PDGFRA 1 4 U U platelet-derived growth factor receptor alpha precursor NM_015686 TED 1 X U U TED protein NM_001772 CD33 0 19 U CD33 antigen (gp67) NM_018968 SNTG2 0 2_random U "syntrophin, gamma 2" NM_015120 ALMS1 1 2 U U ALMS1 NM_000276 OCRL 1 X U phosphatidylinositol polyphosphate 5-phosphatase isoform a NM_001587 OCRL 1 X U U U U phosphatidylinositol polyphosphate 5-phosphotase isoform b NM_144488 RGS3 0 9 U U regulator of G-protein signalling 3 isoform 6 NM_138455 CTHRC1 1 8 U* U U U* U* U* U collagen triple helix repeat containing 1 NM_005554 KRT6A 0 12 U U keratin 6A NM_014865 CNAP1 1 12 M M U M chromosome condensation-related SMC-associated protein 1 NM_002447 MST1R 1 3 U U U M macrophage stimulating 1 receptor (c-met-related tyrosine kinase) NM_032312 MGC11061 1 2 U hypothetical protein MGC11061 NM_000760 CSF3R 0 1 U U U U colony stimulating factor 3 receptor isoform a precursor NM_001715 BLK 0 8 U B lymphoid tyrosine kinase NM_000061 BTK 0 X U U Bruton agammaglobulinemia tyrosine kinase NM_005555 KRT6B 0 12 U U keratin 6B NM_139073 TSARG1 0 2 U U U U U spermatogenesis associated 3 NM_000728 CALCB 1 11 U U "calcitonin-related polypeptide, beta" NM_016323 CEB1 1 4 U cyclin-E binding protein 1 NM_002952 RPS2 1 16 U U U ribosomal protein S2 NM_024090 ELOVL6 1 4 U long-chain fatty-acyl elongase NM_017877 FLJ20555 1 2 U hypothetical protein FLJ20555 NM_014353 RAB26 1 16 U "RAB26, member RAS oncogene family" NM_032960 MAPKAPK2 1 1 U mitogen-activated protein kinase-activated protein kinase 2 isoform 2 NM_018958 C15orf2 1 15 U* chromosome 15 open reading frame 2 NM_003332 TYROBP 0 19 U U U TYRO protein tyrosine kinase binding protein NM_016478 NIPA 1 7 U nuclear interacting partner of anaplastic lymphoma kinase (ALK) NM_007110 TEP1 1 14 U telomerase-associated protein 1 NM_003043 SLC6A6 0 3 U U "solute carrier family 6 (neurotransmitter transporter, taurine), member 6" NM_002162 ICAM3 0 19 U U U intercellular adhesion molecule 3 precursor NM_002762 PRM2 1 16 U U U protamine 2 NM_007155 ZP3 0 7 U zona pellucida glycoprotein 3 (sperm receptor) NM_003636 KCNAB2 1 1 M U U "potassium voltage-gated channel, shaker-related subfamily, beta member 2 isoform 1" NM_014621 HOXD4 1 2 M homeo box D4 NM_000964 RARA 0 17 U "retinoic acid receptor, alpha" NM_015277 NEDD4L 1 18 M* U* ubiquitin-protein ligase NEDD4-like NM_000657 BCL2 1 18 M* B-cell lymphoma protein 2 beta NM_052861 MGC21675 1 4 M hypothetical protein MGC21675 NM_005203 COL13A1 1 10 U* U* M* alpha 1 type XIII collagen isoform 1 NM_019616 F7 0 13 U* M coagulation factor VII precursor isoform b NM_017918 FLJ20647 1 4 U hypothetical protein FLJ20647 NM_000585 IL15 1 4 U* U U* interleukin 15 isoform 1 precursor NM_003601 SMARCA5 1 4 U U U* M SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a5 NM_004362 CLGN 1 4 U U* calmegin NM_000788 DCK 1 4 U U deoxycytidine kinase NM_007292 ACOX1 1 17 U U* acyl-Coenzyme A oxidase isoform b NM_002129 HMGB2 1 4 U* U* high-mobility group box 2 NM_003878 GGH 1 8 U* gamma-glutamyl hydrolase precursor NM_003631 PARG 1 10 U poly (ADP-ribose) glycohydrolase NM_018089 FLJ10415 1 2 U U hypothetical protein FLJ10415 NM_000543 SMPD1 1 11 U "sphingomyelin phosphodiesterase 1, acid lysosomal (acid sphingom" NM_021184 C6orf47 0 6 U G4 protein NM_007254 PNKP 1 19 U U U polynucleotide kinase 3'-phosphatase NM_018396 METTL2 1 7 U putative methyltransferase NM_004907 ETR101 1 19 U immediate early protein NM_007067 MYST2 1 17 U U U histone acetyltransferase NM_004187 SMCX 1 X U "Smcx homolog, X chromosome" NM_016114 ASB1 1 2 U U U ankyrin repeat and SOCS box-containing protein 1 NM_005637 SS18 1 18 U* U "synovial sarcoma, translocated to X chromosome" NM_016406 HSPC155 0 1 U U hypothetical protein HSPC155 NM_006212 PFKFB2 1 1 U U U "6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2" NM_000938 POLR2B 1 4 U U U* U DNA directed RNA polymerase II polypeptide B NM_004337 C8orf1 1 8 U* U* U U* chromosome 8 open reading frame 1 NM_002485 NBS1 1 8 U* U* nibrin NM_014109 PRO2000 1 8 U* U* U* PRO2000 protein NM_024094 MGC5528 1 8 U* U* U* hypothetical protein MGC5528 NM_019069 WDR5B 0 3 U U U U WD repeat domain 5B NM_005081 ZNF142 1 2 U U zinc finger protein 142 (clone pHZ-49) NM_020806 GPHN 1 14 U* U* U* gephyrin NM_001530 HIF1A 1 14 U* U* U* "hypoxia-inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor)" NM_006544 SEC10L1 1 14 U* U* U* brain secretory protein SEC10P NM_031866 FZD8 0 10 U U U frizzled homolog 8 (Drosophila) NM_012320 LYPLA3 1 16 U lysophospholipase 3 (lysosomal phospholipase A2) NM_016551 TM7SF3 1 12 U U U M seven transmembrane protein TM7SF3 NM_032795 FLJ14494 1 11 U* hypothetical protein FLJ14494 NM_007086 AND-1 1 14 U* U* AND-1 protein NM_014039 PTD012 1 11 U PTD012 protein NM_001786 CDC2 1 10 U* U* cell division cycle 2 protein isoform 1 NM_005387 NUP98 1 11 U nucleoporin 98kD isoform 3 NM_006328 RBM14 1 11 U RNA binding motif protein 14 NM_003478 CUL5 1 11 U* Vasopressin-activated calcium-mobilizing receptor-1 NM_032118 FLJ12953 1 2 U U hypothetical protein FLJ12953 similar to Mus musculus D3Mm3e NM_003201 TFAM 1 10 U* U* U* "transcription factor A, mitochondrial" NM_024604 FLJ21908 1 12 U hypothetical protein FLJ21908 NM_006338 GAC1 1 1 U U glioma amplified on chromosome 1 protein (leucine-rich) NM_004260 RECQL4 1 8 U RecQ protein-like 4 NM_012482 ZNF281 1 1 U U zinc finger protein 281 NM_007276 CBX3 1 7 U U* U chromobox homolog 3 NM_004398 DDX10 1 11 U* DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 10 NM_005613 RGS4 0 1 U regulator of G-protein signaling 4 NM_014002 IKBKE 0 1 U IKK-related kinase epsilon NM_030813 SKD3 1 11 U suppressor of potassium transport defect 3 NM_003936 CDK5R2 1 2 U "cyclin-dependent kinase 5, regulatory subunit 2 (p39)" NM_021144 PSIP2 1 9 U PC4 and SFRS1 interacting protein 1 NM_145258 MGC22773 1 1 U hypothetical protein MGC22773 NM_017769 FLJ20333 1 14 U KIAA1333 NM_030631 SLC25A21 1 14 U U "solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21" NM_003582 DYRK3 1 1 U U U dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 NM_145117 NAV2 1 11 U neuron navigator 2 isoform L NM_004328 BCS1L 1 2 U BCS1-like NM_020247 CABC1 1 1 U U "chaperone, ABC1 activity of bc1 complex like" NM_001087 AAMP 1 2 U "angio-associated, migratory cell protein" NM_015488 MR-1 1 2 U U U U myofibrillogenesis regulator 1 NM_000447 PSEN2 1 1 U U presenilin 2 isoform 1 NM_006706 TCERG1 1 5 U transcription elongation regulator 1 NM_006704 SUGT1 1 13 M "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" NM_015132 SNX13 1 7 U* U sorting nexin 13 NM_024728 C7orf10 1 7 U chromosome 7 open reading frame 10 NM_001912 CTSL 1 9 U cathepsin L preproprotein NM_145918 CTSL 1 9 U cathepsin L preproprotein NM_024035 MGC3113 0 8 U* U U hypothetical protein MGC3113 NM_004195 TNFRSF18 1 1 U "tumor necrosis factor receptor superfamily, member 18" NM_148901 TNFRSF18 1 1 U U U U "tumor necrosis factor receptor superfamily, member 18" NM_003999 OSMR 1 5 M M M M oncostatin M receptor NM_024558 C14orf138 1 14 M M M hypothetical protein FLJ13920 NM_003445 ZNF155 0 19 M M M M zinc finger protein 155 (pHZ-96) NM_022771 FLJ12085 1 12 U M M M hypothetical protein FLJ12085 NM_004172 SLC1A3 0 5 M M M M M "solute carrier family 1 (glial high affinity glutamate transporter), member 3" NM_012382 OSRF 1 5 M* M M M osmosis responsive factor NM_005983 SKP2 1 5 M M M M S-phase kinase-associated protein 2 isoform 1 NM_032637 SKP2 1 5 M M M M S-phase kinase-associated protein 2 isoform 2 NM_032933 MGC11386 0 18 U* U hypothetical protein MGC11386 NM_013978 BNIP1 0 5 U BCL2/adenovirus E1B 19kD interacting protein 1 isoform BNIP1-a NM_006168 NKX6-1 1 4 M U* "NK6 transcription factor related, locus 1" NM_080683 PTPN13 1 4 U* "protein tyrosine phosphatase, non-receptor type 13 isoform 1" NM_004433 ELF3 0 1 M M "E74-like factor 3 (ets domain transcription factor, epithelial-specific )" NM_000347 SPTB 1 14 M "spectrin, beta, erythrocytic (includes spherocytosis, clinical type I)" NM_018951 HOXA10 1 7 U* U U homeobox protein A10 isoform a NM_002501 NFIX 1 19 U U U U nuclear factor I/X (CCAAT-binding transcription factor) NM_004642 CDK2AP1 1 12 U M M M M M M CDK2-associated protein 1 NM_014586 HUNK 1 21 U M M M hormonally upregulated Neu-associated kinase NM_014644 PDE4DIP 0 1 U M M M M phosphodiesterase 4D interacting protein (myomegalin) NM_007173 SPUVE 1 11 M M M M M "protease, serine, 23 precursor" NM_022492 FLJ12788 1 2 M M M hypothetical protein FLJ12788 NM_000389 CDKN1A 1 6 M M M cyclin-dependent kinase inhibitor 1A NM_001924 GADD45A 1 1 M M M "growth arrest and DNA-damage-inducible, alpha" NM_024963 FLJ11467 1 7 U hypothetical protein FLJ11467 NM_013248 NXT1 1 20 U NTF2-related export protein 1 NM_052865 C20orf72 1 20 M* M* chromosome 20 open reading frame 72 NM_014660 PHF14 1 7 M* M M* M KIAA0783 gene product NM_017410 HOXC13 1 12 M M* homeo box C13 NM_000082 CKN1 1 5 M* M* M M* M M Cockayne syndrome 1 protein NM_002451 MTAP 1 9 M M M M 5'-methylthioadenosine phosphorylase NM_003525 HIST1H2BI 1 6 M* M* "H2B histone family, member K" NM_002165 ID1 1 20 M* M* M* M* "inhibitor of DNA binding 1, dominant negative helix-loop-helix protein" NM_003640 IKBKAP 1 9 M M "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" NM_006020 ALKBH 1 14 M M M "alkB, alkylation repair homolog" NM_002486 NCBP1 1 9 M* "nuclear cap binding protein subunit 1, 80kDa" NM_005184 CALM3 1 19 M M "calmodulin 3 (phosphorylase kinase, delta)" NM_002874 RAD23B 1 9 M M UV excision repair protein RAD23 homolog B NM_000227 LAMA3 0 18 U* laminin alpha 3 subunit precursor NM_003930 SCAP2 1 7 U* src family associated phosphoprotein 2 NM_016265 ZNF325 1 7 U* M* GIOT-3 for gonadotropin inducible transcription repressor-3 NM_012153 EHF 0 11 U ets homologous factor isoform b NM_000790 DDC 0 7 M M dopa decarboxylase (aromatic L-amino acid decarboxylase) NM_130470 MADD 1 11 M "MAP-kinase activating death domain-containing protein, isoform a" NM_003001 SDHC 1 1 U U "succinate dehydrogenase complex, subunit C precursor" NM_003775 EDG6 1 19 U U "endothelial differentiation, G protein coupled receptor 6 precursor" NM_012385 P8 0 16 U U U p8 protein (candidate of metastasis 1) NM_000882 IL12A 1 3 U interleukin 12A precursor NM_004165 RRAD 1 16 U U U Ras-related associated with diabetes NM_147129 FLJ36525 1 3 U hypothetical protein LOC259173 NM_003120 SPI1 1 11 U spleen focus forming virus (SFFV) proviral integration oncogene spi1 NM_000417 IL2RA 0 10 U "interleukin 2 receptor, alpha chain precursor" NM_016113 TRPV2 0 17 U "transient receptor potential cation channel, subfamily V, member 2" NM_032128 DKFZP566M114 1 4 M M M Homo sapiens hypothetical protein DKFZp566M114 (DKFZP566M114) NM_007285 GABARAPL2 1 16 M M M GABA(A) receptor-associated protein-like 2 NM_022041 GAN 1 16 M M M gigaxonin NM_001839 CNN3 1 1 M M M calponin 3 NM_014324 AMACR 1 5 M alpha-methylacyl-CoA racemase NM_017761 FLJ20312 1 1_random M M M hypothetical protein FLJ20312 NM_138284 IL17D 1 13 M M* M* M* interleukin 17D NM_004875 POLR1C 1 6 M M M RNA polymerase I subunit NM_006479 PIR51 1 12 M M M M M RAD51-interacting protein NM_005996 TBX3 1 12 M M M M M T-box 3 protein isoform 1 NM_032380 EFG2 1 5 M* M* mitochondrial elongation factor G2 NM_006041 HS3ST3B1 1 17 M heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1 NM_002749 MAPK7 1 17 M mitogen-activated protein kinase 7 isoform 1 NM_006169 NNMT 0 11 M* M M nicotinamide N-methyltransferase NM_018064 C6orf166 1 6 M* M* hypothetical protein FLJ10342 NM_005548 KARS 1 16 M lysyl-tRNA synthetase NM_138343 KNSL8 1 6 M kinesin-like 8 NM_024979 MCF2L 1 13 M MCF.2 cell line derived transforming sequence-like NM_024010 MTRR 1 5 M methionine synthase reductase isoform 2 NM_032087 PCDHGA7 1 5 M "protocadherin gamma subfamily A, 1" NM_000965 RARB 0 3 M "retinoic acid receptor, beta isoform 1" NM_002033 FUT4 1 11 U* M "fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)" NM_000177 GSN 1 9 U "gelsolin (amyloidosis, Finnish type)" NM_032872 JFC1 0 1 U synaptotagmin-like 1 NM_004659 MMP23A 1 1 U matrix metalloproteinase 23A NM_182649 PCNA 1 20 U proliferating cell nuclear antigen NM_001116 ADCY9 0 16 M adenylate cyclase 9 NM_024758 AGMAT 1 1 U agmatine ureohydrolase (agmatinase) NM_006092 CARD4 1 7 M "caspase recruitment domain family, member 4" NM_003818 CDS2 1 20 U phosphatidate cytidylyltransferase 2 NM_024668 FLJ20288 1 5 M M FLJ20288 protein NM_004899 BRE 1 2 M brain and reproductive organ-expressed (TNFRSF1A modulator) NM_001902 CTH 1 1 M cystathionase isoform 1 NM_004048 B2M 1 15 M beta-2-microglobulin NM_021824 NIF3L1 0 2 M NIF3 NGG1 interacting factor 3-like 1 NM_004888 ATP6V1G1 1 9 M M "ATPase, H+ transporting, lysosomal, V1 subunit G isoform 1" NM_002946 RPA2 1 1 M M "replication protein A2, 32kDa" NM_014229 SLC6A11 1 3 U "solute carrier family 6 (neurotransmitter transporter, GABA), member 11" NM_001516 GTF2H3 1 12 M "general transcription factor IIH, polypeptide 3, 34kDa" NM_002097 GTF3A 1 13 M general transcription factor IIIA NM_144706 MGC29762 1 2 M chromosome 2 open reading frame 15 NM_006158 NEFL 1 8 M M "neurofilament, light polypeptide 68kDa" NM_006194 PAX9 1 14 M paired box gene 9 NM_012243 SLC35A3 1 1 M "solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3" NM_014174 THY28 1 11 M HSPC144 protein NM_017779 FLJ20354 1 1 M M M hypothetical protein FLJ20354 NM_032673 NSPC1 1 2 M M hypothetical protein MGC10882 NM_006086 TUBB4 1 16 M "tubulin, beta, 4" NM_005211 CSF1R 0 5 M M M M M colony stimulating factor 1 receptor precursor NM_003532 HIST1H3E 1 6 M M* M M M M M M M* M* M* "H3 histone family, member D" NM_153038 FLJ32447 1 2 M M hypothetical protein FLJ32447 NM_003740 KCNK5 1 6 M M M M "potassium channel, subfamily K, member 5" NM_005098 MSC 1 8 M M musculin (activated B-cell factor-1) NM_005806 OLIG2 1 21 M* oligodendrocyte lineage transcription factor 2 NM_003542 HIST1H4C 1 6 M* M* "H4 histone family, member G" NM_022164 LCN7 0 1 M M M M P3ECSL NM_006021 DLEU2 1 13 M M "deleted in lymphocytic leukemia, 2" NM_000926 PGR 1 11 M progesterone receptor NM_004472 FOXD1 0 5 M* M M* forkhead box D1 NM_024296 MGC1203 1 1 M hypothetical protein MGC1203 NM_145805 ISL2 1 15 M M M M "ISL2 transcription factor, LIM/homeodomain, (islet-2)" NM_004330 BNIP2 1 15 M BCL2/adenovirus E1B 19kD interacting protein 2 NM_002757 MAP2K5 1 15 M* mitogen-activated protein kinase kinase 5 isoform B NM_018163 FLJ10634 1 15 M M M hypothetical protein FLJ10634 NM_000985 RPL17 1 18 M M M ribosomal protein L17 NM_014978 SORCS3 1 10 M VPS10 domain receptor protein SORCS 3 NM_004701 CCNB2 1 15 M M M* M M M M M M cyclin B2 NM_014262 LEPREL2 1 12 M M M M M B protein NM_183001 SHC1 0 1 M M M SHC (Src homology 2 domain containing) transforming protein 1 NM_000546 TP53 1 17 M M M M M tumor protein p53 NM_004730 ETF1 1 5 M eukaryotic translation termination factor 1 NM_002082 GPRK6 1 5 U M G protein-coupled receptor kinase 6 NM_002520 NPM1 1 5 U M M "nucleophosmin (nucleolar phosphoprotein B23, numatrin)" NM_003291 TPP2 1 13 M tripeptidyl peptidase II NM_000024 ADRB2 1 5 M "adrenergic, beta-2-, receptor, surface" NM_004627 WRB 1 21 U* tryptophan rich basic protein NM_006732 FOSB 1 19 M M FBJ murine osteosarcoma viral oncogene homolog B NM_014335 CRI1 1 15 M* M M CREBBP/EP300 inhibitory protein 1 NM_004663 RAB11A 1 15 M* M* M* "RAB11A, member RAS oncogene family" NM_003524 HIST1H2BH 1 6 M* M* "H2B histone family, member J" NM_006547 IMP-3 1 7 M IGF-II mRNA-binding protein 3 NM_020158 RRP46 1 19 M* M M M exosome component Rrp46 NM_004596 SNRPA 1 19 M small nuclear ribonucleoprotein polypeptide A NM_021833 UCP1 1 4 M uncoupling protein 1 NM_000610 CD44 1 11 M CD44 antigen (homing function and Indian blood group system) NM_001262 CDKN2C 1 1 M M cyclin-dependent kinase inhibitor 2C NM_006892 DNMT3B 1 20 M* M* DNA (cytosine-5-)-methyltransferase 3 beta NM_005469 PTE1 0 20 M* peroxisomal acyl-CoA thioesterase NM_002827 PTPN1 1 20 M* M* "protein tyrosine phosphatase, non-receptor type 1" NM_013375 ABT1 1 6 M M* M* activator of basal transcription 1 NM_021968 HIST1H4J 1 6 M M* M* M* "histone 1, H4j" NM_021063 HIST1H2BD 0 6 M* "H2B histone family, member B" NM_015966 SDBCAG84 1 20 M* serologically defined breast cancer antigen 84 NM_006282 STK4 1 20 M* M* M* serine/threonine kinase 4 NM_016359 ANKT 1 15 M M clone HQ0310 PRO0310p1 NM_024045 DDX50 1 10 M* nucleolar protein GU2 NM_003714 STC2 1 5 M M M stanniocalcin 2 NM_003358 UGCG 1 9 M ceramide glucosyltransferase NM_024813 FLJ13150 1 1 M hypothetical protein FLJ13150 NM_052886 MAL2 1 8 M "mal, T-cell differentiation protein 2" NM_030634 ZNF436 1 1 M zinc finger protein 436 NM_053034 ANTXR1 1 2 M tumor endothelial marker 8 isoform 2 precursor NM_000269 NME1 1 17 M non-metastatic cells 1 protein NM_018304 FLJ11029 1 17 M M hypothetical protein FLJ11029 NM_002194 INPP1 1 2 M M inositol polyphosphate-1-phosphatase NM_014917 KIAA0976 1 1 M M M netrin G1f NM_003188 MAP3K7 1 6 M* M* M* mitogen-activated protein kinase kinase kinase 7 isoform A NM_145331 MAP3K7 1 6 M* M* M* mitogen-activated protein kinase kinase kinase 7 isoform B NM_053001 OSR2 1 8 M* M M odd-skipped-related 2A protein NM_004181 UCHL1 1 4 M ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) NM_018268 FLJ10904 1 5 M M* M* hypothetical protein FLJ10904 NM_014318 APR-2 0 17 M M apoptosis related protein NM_019854 HRMT1L3 1 12 M M HMT1 hnRNP methyltransferase-like 3 NM_018164 FLJ10637 1 12 M hypothetical protein FLJ10637 NM_007306 BRCA1 1 17 M M "breast cancer 1, early onset isoform BRCA1-exon4" NM_004644 AP3B2 1 15 M "adaptor-related protein complex 3, beta 2 subunit" NM_020726 NLN 1 5 M neurolysin (metallopeptidase M3 family) NM_000959 PTGFR 1 1 M prostaglandin F receptor (FP) NM_002584 PAX7 1 1 M paired box gene 7 isoform 1 NM_014581 OBP2B 0 9 M odorant-binding protein 2B NM_001063 TF 1 3 M M transferrin NM_013372 CKTSF1B1 1 15 M "cysteine knot superfamily 1, BMP antagonist 1" NM_007296 BRCA1 1 17 M "breast cancer 1, early onset" NM_002913 RFC1 1 4 M replication factor C large subunit NM_003440 ZNF140 1 12 M M* M M zinc finger protein 140 (clone pHZ-39) NM_002700 POU4F3 1 5 M* M M "POU domain, class 4, transcription factor 3" NM_000633 BCL2 1 18 M* M M M M B-cell lymphoma protein 2 alpha NM_000602 SERPINE1 0 7 M M M "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" NM_005509 DMXL1 1 5 M M M M M M M* Dmx-like 1 NM_144977 MGC27044 1 1 M "family with sequence similarity 31, member B" NM_005170 ASCL2 1 11 M achaete-scute complex homolog-like 2 NM_014829 DDX46 1 5 M M M Prp5-like DEAD-box protein NM_133344 RAD17 1 5 M* M* RAD17 homolog isoform 1 NM_004675 ARHI 1 1 M M M M U ras homolog I NM_006557 DMRT2 1 9 M M M M doublesex and mab-3 related transcription factor 2 NM_002760 PRKY 1 Y M* M* "protein kinase, Y-linked" NM_006815 RNP24 1 12 M coated vesicle membrane protein NM_130898 AIBZIP 1 1 M M M M cAMP responsive element binding protein 3-like 4 NM_006571 DCTN6 1 8 M* M M novel RGD-containing protein NM_000451 SHOX 1 Y M* M* short stature homeobox isoform a NM_001008 RPS4Y 0 Y M* M* M* M M M* M M* M M* M* "ribosomal protein S4, Y-linked Y isoform" NM_005880 DNAJA2 1 16 M M M M M M M DnaJ subfamily A member 2 NM_014012 REM 1 20 M M M* M* M* M* RAS (RAD and GEM)-like GTP-binding NM_001929 DGUOK 1 2 M deoxyguanosine kinase isoform c precursor NM_080916 DGUOK 1 2 M M M M deoxyguanosine kinase isoform a precursor NM_014690 KIAA0773 0 7 U U KIAA0773 gene product NM_153031 FLJ32063 1 2 U hypothetical protein FLJ32063 NM_020387 RAB25 0 1 M M U RAB25 NM_033304 ADRA1A 1 8 M M M M alpha-1A-adrenergic receptor isoform 4 NM_144971 MGC26641 1 Y M M Homo sapiens hypothetical protein MGC26641 (MGC26641) NM_003531 HIST1H3C 1 6 M M M* "H3 histone family, member C" NM_172316 MEIS2 0 15 M M M* homeobox protein Meis2 isoform h NM_016154 RAB4B 1 19 M M M M ras-related GTP-binding protein 4b NM_003672 CDC14A 1 1 M M M CDC14 homolog A isoform 1 NM_005109 OSR1 1 3 M M oxidative-stress responsive 1 NM_006739 MCM5 1 22 M M M minichromosome maintenance deficient protein 5 NM_006254 PRKCD 1 3 M "protein kinase C, delta" NM_003639 IKBKG 1 X U M "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma" NM_032166 TREX1 1 3 M M three prime repair exonuclease 1 isoform c NM_003107 SOX4 0 6 M M M* SRY (sex determining region Y)-box 4 NM_014322 OPN3 1 1 M M "opsin 3 (encephalopsin, panopsin)" NM_033627 TREX1 1 3 M M M M M three prime repair exonuclease 1 isoform b